PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00117.150
Common NameJCGZ_04439, LOC105633804
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ZF-HD
Protein Properties Length: 302aa    MW: 33820.5 Da    PI: 8.1644
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00117.150genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.92.1e-3279136260
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     ++vrY+eCl+NhAas+Gg+++DGCgEfmp  geegt +alkCaAC+CHRnFHR+ev+ e
  Jcr4S00117.150  79 SNVRYRECLRNHAASVGGNVFDGCGEFMPG-GEEGTLEALKCAACDCHRNFHRKEVDGE 136
                     689**************************9.999*********************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.8E-3080133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2381134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.4E-2982133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.71583132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.38E-19215284IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-30223285IPR009057Homeodomain-like
TIGRFAMsTIGR015654.7E-29224281IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MELRGQENDI RASLPSSYST HHSSGASERR RDGNHNGNTT LTYTQTLDHP NRQPSLTQAR  60
SPNPDRLSTI SKGSNSKTSN VRYRECLRNH AASVGGNVFD GCGEFMPGGE EGTLEALKCA  120
ACDCHRNFHR KEVDGESQFS PSSRRSTMVH SLQLPPPLPS PTVLHHQRYS MGLHNSPTAA  180
NMVQPMTVAF GGGGGGTESS SEDLNAFQSN AEGVPPPPPY VLSRKRFRTK FTQEQKDRMM  240
EFAEKVGWRI NKQDEEEVEK FCAEVGVKRQ VFKVWMHNNK NLKKQQQQQQ QEQELEQGQE  300
PL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-242252811874ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071869.10.0PREDICTED: zinc-finger homeodomain protein 5
SwissprotQ9FRL52e-70ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A067L3390.0A0A067L339_JATCU; Uncharacterized protein
STRINGPOPTR_0002s03660.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.15e-71homeobox protein 33
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]